Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3550Hypothetical protein. (96 aa)    
Predicted Functional Partners:
RN08_3549
Isochorismate synthase.
       0.705
RN08_3548
Phosphoglycerate mutase.
       0.704
RN08_3831
Hypothetical protein.
    
 0.650
RN08_2901
Hypothetical protein.
  
 
 0.608
RN08_1775
Imidazole glycerol phosphate synthase subunit HisH.
    
  0.577
RN08_1778
Imidazole glycerol phosphate synthase subunit HisF.
    
  0.575
RN08_1779
phosphoribosyl-AMP cyclohydrolase.
    
  0.548
RN08_2870
4-aminobutyrate aminotransferase.
    
 0.548
RN08_3630
L-lysine-epsilon aminotransferase.
    
 0.548
RN08_3547
SOJ/ParA-like protein.
       0.505
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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