Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3554Transcriptional regulator WhiB1. (84 aa)    
Predicted Functional Partners:
RN08_2988
RNA polymerase sigma factor SigA.
    
 
 0.931
RN08_2995
RNA polymerase sigma factor SigB.
    
 
 0.780
RN08_2035
HTH-type transcriptional regulator.
  
   
 0.778
RN08_3196
Hypothetical protein.
  
     0.771
RN08_1609
Protein-export membrane protein SecG.
  
     0.760
RN08_1556
DNA-directed RNA polymerase subunit omega.
  
     0.754
RN08_1479
Endonuclease NucS.
  
     0.740
RN08_3553
Hypothetical protein.
     
 0.726
RN08_3520
Hypothetical protein.
  
     0.719
RN08_2271
RNA polymerase-binding protein RbpA.
  
     0.690
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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