Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3565Hypothetical protein. (330 aa)    
Predicted Functional Partners:
RN08_0465
Thiamine-phosphate synthase.
     
 0.954
RN08_3564
3-phosphoshikimate 1-carboxyvinyltransferase.
 
   
 0.928
RN08_3285
Thiamine-monophosphate kinase.
     
 0.905
RN08_0814
Adenylate kinase.
     
  0.900
RN08_3563
Hypothetical protein.
     
 0.842
RN08_3072
30S ribosomal protein S15.
  
   0.823
RN08_0790
30S ribosomal protein S17.
 
 
 
 0.816
RN08_0798
30S ribosomal protein S8.
  
 
   0.811
RN08_0801
30S ribosomal protein S5.
    
   0.797
RN08_0761
30S ribosomal protein S12.
   
   0.793
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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