STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3585TetR family transcriptional regulator. (211 aa)    
Predicted Functional Partners:
RN08_3588
Transmembrane alkane 1-monooxygenase AlkB.
 
    0.936
RN08_3586
Rubredoxin RubB.
  
  
 0.904
RN08_3587
Rubredoxin RubA.
 
     0.891
RN08_3584
Adenosylhomocysteinase.
       0.765
RN08_0983
Hypothetical protein.
  
     0.729
RN08_3583
Thymidylate kinase.
       0.698
RN08_1194
Hypothetical protein.
  
     0.665
RN08_0517
Hypothetical protein.
 
     0.653
RN08_0325
ESX-3 secretion system protein EccB3.
  
     0.618
RN08_1427
Lipoprotein LprB.
  
     0.600
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.