STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3586Rubredoxin RubB. (60 aa)    
Predicted Functional Partners:
RN08_3588
Transmembrane alkane 1-monooxygenase AlkB.
 
  
 0.947
RN08_3585
TetR family transcriptional regulator.
  
  
 0.904
RN08_3587
Rubredoxin RubA.
 
    
0.884
RN08_3589
Cationic amino acid transport integral membrane protein.
       0.767
RN08_0284
Nitrite reductase large subunit NirB.
  
 
 0.742
RN08_0767
Ferredoxin reductase.
  
 
 0.742
RN08_2074
Reductase.
  
 
 0.742
RN08_3584
Adenosylhomocysteinase.
       0.625
RN08_3590
Hypothetical protein.
  
    0.611
RN08_2316
Transmembrane serine/threonine-protein kinase PknJ.
      
 0.531
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.