Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3603Hypothetical protein. (497 aa)    
Predicted Functional Partners:
RN08_3604
Hypothetical protein.
  
    0.945
RN08_4199
Terminal beta-(1->2)-arabinofuranosyltransferase.
 
  
 0.933
RN08_4198
Diacylglycerol acyltransferase/mycolyltransferase Ag85A.
  
  
  0.923
RN08_0149
Diacylglycerol acyltransferase/mycolyltransferase Ag85C.
  
  
  0.916
RN08_2092
Diacylglycerol acyltransferase/mycolyltransferase Ag85B.
  
  
  0.914
RN08_3602
dTDP-4-dehydrorhamnose reductase.
     
 0.838
RN08_3601
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
 
   
 0.820
RN08_3600
D-alpha-D-mannose-1-phosphate guanylyltransferase ManB.
 
     0.814
RN08_3605
Hypothetical protein.
       0.653
RN08_1880
Hypothetical protein.
  
    0.651
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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