STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3676Penicillin-binding protein DacB. (405 aa)    
Predicted Functional Partners:
RN08_4000
Hypothetical protein.
     
 0.977
RN08_3206
Penicillin-binding protein DacB2.
  
  
 
0.910
RN08_3678
N-acetylglucosamine-6-phosphate deacetylase NagA.
     
 0.821
RN08_2402
Penicillin-binding membrane protein PbpB.
 
 
 0.805
RN08_3675
Aminotransferase.
  
  
 0.789
RN08_0021
Penicillin-binding protein PbpA.
 
 
 0.769
RN08_0059
Bifunctional penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase.
 
 
 0.767
RN08_3159
Penicillin-binding lipoprotein.
  
 
 0.721
RN08_3677
Sugar-transport integral membrane protein SugI.
     
 0.687
RN08_2393
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase.
 
 
 0.678
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.