Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN08_3759Dioxygenase. (295 aa)    
Predicted Functional Partners:
RN08_3758
HTH-type transcriptional regulator.
     
 0.914
RN08_0118
Peptide synthetase Nrp.
 
  
 0.852
RN08_0115
Fatty acyl CoA thioesterase FcoT.
  
  
 0.763
RN08_0117
Hypothetical protein.
  
  
 0.746
RN08_0116
fatty-acid--CoA ligase FadD10.
  
  
 0.741
RN08_0113
PPE family protein PPE1.
  
  
 0.737
RN08_3751
Hydrolase.
     
 0.668
RN08_0215
Dihydroxy-acid dehydratase; Overlaps another CDS with the same product name.
    
 0.557
RN08_0216
Dihydroxy-acid dehydratase; Overlaps another CDS with the same product name.
    
 0.557
RN08_3760
Antitoxin VapB47.
       0.490
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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