STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3769Redox-responsive transcriptional regulator WhiB3. (102 aa)    
Predicted Functional Partners:
RN08_0846
Two component system response transcriptional positive regulator PhoP.
      
 0.792
RN08_3196
Hypothetical protein.
  
     0.687
RN08_2988
RNA polymerase sigma factor SigA.
    
 
 0.644
RN08_2035
HTH-type transcriptional regulator.
  
   
 0.602
RN08_4058
Transcriptional regulator WhiB4.
 
   
0.599
RN08_3559
ECF RNA polymerase sigma factor SigH.
 
   
 0.581
RN08_2349
Hypothetical protein.
  
     0.577
RN08_0029
Transcriptional regulator WhiB5.
      
 0.576
RN08_2995
RNA polymerase sigma factor SigB.
    
 
 0.556
RN08_1590
Transcriptional regulator WhiA.
      
 0.544
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.