STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3773Ribosomal-protein-alanine acetyltransferase RimI. (158 aa)    
Predicted Functional Partners:
RN08_3774
Hypothetical protein.
 0.994
RN08_3775
tRNA threonylcarbamoyladenosine biosynthesis protein.
  
 
 0.972
RN08_3772
O-sialoglycoprotein endopeptidase.
  
 
 0.963
RN08_3776
Alanine racemase.
    
 0.940
RN08_1112
Ribosomal-protein-alanine acetyltransferase RimJ.
  
 
 0.782
RN08_3771
Chaperonin GroES.
     
 0.589
RN08_3793
Glutamate decarboxylase GadB.
  
    0.543
RN08_3770
Chaperonin GroEL.
  
  
 0.521
RN08_1834
Acetylornithine aminotransferase.
    
 0.500
RN08_1684
TDP-4-oxo-6-deoxy-D-glucose aminotransferase.
  
 0.465
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.