STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3810ESX-4 secretion system protein EccD4. (471 aa)    
Predicted Functional Partners:
RN08_3809
ESX-4 secretion system protein EccC4.
 
 
 0.996
RN08_3811
Membrane-anchored mycosin.
 
  
 0.983
RN08_3808
Alanine/valine-rich protein.
 
  
 0.980
RN08_1983
ESX-5 type VII secretion system protein EccB5.
 
 
 0.924
RN08_1984
ESX-5 type VII secretion system protein EccC5.
 
 
 0.913
RN08_0334
ESX-3 secretion system protein EccE.
  
 
 0.904
RN08_0325
ESX-3 secretion system protein EccB3.
 
 
 0.903
RN08_0326
ESX-3 secretion system protein EccC3.
 
 
 0.899
RN08_4300
Alanine/proline-rich protein.
 
  
 0.892
RN08_4290
ESX-2 type VII secretion system protein EccC.
 
 
 0.876
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.