STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3816tRNA pseudouridine synthase A. (297 aa)    
Predicted Functional Partners:
RN08_3818
DNA-directed RNA polymerase subunit alpha.
  
  
 0.991
RN08_3817
50S ribosomal protein L17.
  
  
 0.990
RN08_3080
tRNA pseudouridine synthase B.
 
 0.909
RN08_0001
Chromosomal replication initiator protein DnaA.
 
 
    0.902
RN08_3819
30S ribosomal protein S4.
  
 
 0.852
RN08_2624
Endoribonuclease.
  
 0.790
RN08_3821
30S ribosomal protein S13.
  
 
 0.787
RN08_3820
30S ribosomal protein S11.
  
 
 0.778
RN08_0790
30S ribosomal protein S17.
  
 0.713
RN08_3432
Molybdenum cofactor biosynthesis protein MoeB.
  
 0.704
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.