STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3860Short-chain type dehydrogenase/reductase. (317 aa)    
Predicted Functional Partners:
RN08_3914
Dehydrogenase.
 0.956
RN08_3739
3-hydroxyacyl-thioester dehydratase HtdY.
 0.948
RN08_3862
acyl-CoA dehydrogenase FadE26.
 0.881
RN08_2798
Fatty acid synthase.
  
 0.842
RN08_2799
Fatty acid synthase.
  
 0.842
RN08_3861
Ferredoxin FdxD.
       0.841
RN08_3863
acyl-CoA dehydrogenase FadE27.
 
  0.830
RN08_3864
long-chain-fatty-acid--CoA ligase FadD17.
 
 0.812
RN08_1179
Oxidoreductase.
 
 
 0.774
RN08_3925
Short-chain type dehydrogenase/reductase.
  
     0.773
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.