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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3868PE-PGRS family protein PE_PGRS57. (408 aa)    
Predicted Functional Partners:
RN08_1995
ESX-5 type VII secretion system protein EccD.
  
 
 
 0.804
RN08_3692
PPE family protein PPE54.
  
     0.772
RN08_0348
PPE family protein PPE6.
  
     0.771
RN08_0399
PPE family protein PPE8.
  
     0.771
RN08_0494
Hypothetical protein.
  
     0.771
RN08_2612
PPE family protein PPE53.
  
     0.771
RN08_3697
PPE family protein PPE56; Overlaps another CDS with the same product name.
  
     0.771
RN08_3934
PPE family protein PPE64.
  
     0.771
RN08_0842
PPE family protein PPE12.
  
     0.770
RN08_3696
PPE family protein PPE56; Overlaps another CDS with the same product name.
  
     0.770
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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