STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3900Siderophore-binding protein. (174 aa)    
Predicted Functional Partners:
RN08_3967
Carbonic anhydrase.
 
 
 
 0.873
RN08_3901
3-ketosteroid-9-alpha-hydroxylase oxygenase subunit.
       0.773
RN08_3902
Hypothetical protein.
       0.773
RN08_3610
Transmembrane carbonic anhydrase.
   
 
 0.682
RN08_1437
Beta-carbonic anhydrase.
   
 
 0.616
RN08_1790
Pyruvate kinase.
    
  0.564
RN08_1604
Phosphoglycerate kinase.
    
 0.543
RN08_1913
Carboxylase.
    
  0.510
RN08_0692
Hypothetical protein.
    
  0.509
RN08_1143
Enolase; Overlaps another CDS with the same product name.
    
 0.495
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.