Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3902Hypothetical protein. (149 aa)    
Predicted Functional Partners:
RN08_3901
3-ketosteroid-9-alpha-hydroxylase oxygenase subunit.
 
    0.969
RN08_3900
Siderophore-binding protein.
       0.750
RN08_3945
Extradiol dioxygenase.
 
     0.748
RN08_3918
Hypothetical protein.
  
     0.746
RN08_3896
Hypothetical protein.
 
     0.729
RN08_3029
Transmembrane alanine-rich protein.
  
     0.728
RN08_0849
Hypothetical protein.
  
     0.709
RN08_3951
HTH-type transcriptional regulator KstR.
  
     0.689
RN08_3917
Hypothetical protein.
  
     0.678
RN08_3962
Lipoprotein LpqE.
  
     0.665
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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