Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3907Hypothetical protein. (375 aa)    
Predicted Functional Partners:
RN08_3906
Oxidoreductase.
 
  
 0.986
RN08_3905
Hypothetical protein.
 
    0.927
RN08_3901
3-ketosteroid-9-alpha-hydroxylase oxygenase subunit.
 
     0.805
RN08_3947
Flavin-dependent monooxygenase oxygenase subunit HsaA.
 
     0.764
RN08_0354
Hypothetical protein.
 
     0.752
RN08_3918
Hypothetical protein.
  
     0.737
RN08_3945
Extradiol dioxygenase.
 
     0.728
RN08_3917
Hypothetical protein.
  
     0.713
RN08_0888
Insertion sequence element IS1547 transposase.
  
   
 0.711
RN08_3896
Hypothetical protein.
  
     0.711
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.