STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3936acyl-CoA dehydrogenase FadE30. (312 aa)    
Predicted Functional Partners:
RN08_3935
Oxidoreductase.
 
 0.994
RN08_3940
acyl-CoA dehydrogenase FadE32.
  
 0.992
RN08_3941
acyl-CoA dehydrogenase FadE33.
  
 0.988
RN08_3926
enoyl-CoA hydratase EchA20.
 
 0.977
RN08_3938
fatty-acid--CoA ligase FadD3.
 
 
 0.946
RN08_3939
acyl-CoA dehydrogenase FadE31.
 
  
0.943
RN08_3927
CoA-transferase subunit alpha.
 
 
 0.936
RN08_3928
CoA-transferase subunit beta.
 
 
 0.910
RN08_2148
acyl-CoA dehydrogenase FadE18.
   
 0.901
RN08_3916
Lipid transfer protein.
 
 0.892
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.