STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3958cysteine--tRNA ligase. (469 aa)    
Predicted Functional Partners:
RN08_2590
Serine acetyltransferase.
 
 
 0.952
RN08_3957
tRNA/rRNA methyltransferase.
  
 
 0.939
RN08_4232
serine--tRNA ligase.
 
 
 0.870
RN08_2716
valine--tRNA ligase.
 
  
 0.850
RN08_2895
threonine--tRNA ligase.
 
  
 0.850
RN08_3959
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
       0.793
RN08_3960
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
       0.793
RN08_0050
leucine--tRNA ligase.
  
 
 0.790
RN08_1446
arginine--tRNA ligase.
  
 
 0.785
RN08_3961
RNA polymerase-binding transcription factor CarD.
       0.782
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.