STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3973Lipoprotein LpqF. (438 aa)    
Predicted Functional Partners:
RN08_3972
Heme-degrading monooxygenase.
     
 0.945
RN08_1817
Initiation factor IF-3.
     
 0.789
RN08_3971
Hydrolase.
       0.766
RN08_4089
Hypothetical protein.
  
     0.751
RN08_4204
Cell surface protein.
  
     0.751
RN08_3029
Transmembrane alanine-rich protein.
  
     0.747
RN08_0332
ESX-3 secretion system protein EccD.
  
     0.734
RN08_0913
Exported protein.
  
     0.718
RN08_0467
Sulfur carrier protein ThiS.
  
     0.672
RN08_3554
Transcriptional regulator WhiB1.
      
 0.639
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.