STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3977Iron-regulated H-NS-like protein. (112 aa)    
Predicted Functional Partners:
RN08_1554
Integration host factor MihF.
  
   
 0.816
RN08_1556
DNA-directed RNA polymerase subunit omega.
      
 0.792
RN08_3295
DNA-binding protein HU.
      
 0.788
RN08_2361
cysteine:1D-myo-inosityl 2-amino-2-deoxy--D-glucopyranoside ligase.
      
 0.776
RN08_3803
Phosphoglucosamine mutase.
      
 0.760
RN08_3976
ATP-dependent protease ATP-binding subunit ClpC.
       0.716
RN08_3979
Type III pantothenate kinase.
       0.696
RN08_3980
Aspartate 1-decarboxylase.
       0.696
RN08_3981
Pantothenate synthetase.
       0.696
RN08_3982
Alanine/leucine-rich protein.
       0.696
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.