STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4008Transmembrane protein. (586 aa)    
Predicted Functional Partners:
RN08_4007
UDP-glucose 4-epimerase.
  
    0.789
RN08_0256
Transmembrane protein.
 
     0.726
RN08_0257
Membrane protein.
 
     0.722
RN08_1654
Membrane protein.
  
     0.719
RN08_3346
Hypothetical protein.
 
   
 0.711
RN08_2957
Alpha-(1->3)-arabinofuranosyltransferase.
  
     0.693
RN08_4196
Membrane protein.
  
     0.670
RN08_3902
Hypothetical protein.
  
     0.657
RN08_3580
Lipoprotein LpqB.
 
     0.634
RN08_1402
Acyltransferase.
 
   
 0.622
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.