Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4045Transmembrane protein. (172 aa)    
Predicted Functional Partners:
RN08_4046
Epoxide hydrolase EphE.
 
     0.854
RN08_4044
Protease.
 
     0.702
RN08_3539
Hypothetical protein.
  
     0.664
RN08_3829
4-hydroxy-2-oxovalerate aldolase MhpE.
      
 0.658
RN08_3653
Hypothetical protein.
  
     0.586
RN08_3592
Hypothetical protein.
  
     0.566
RN08_3800
Hypothetical protein.
  
     0.562
RN08_2270
Hypothetical protein.
  
     0.560
RN08_0958
Hypothetical protein.
  
     0.545
RN08_1881
Copper transporter MctB.
  
     0.543
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.