STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4048Hypothetical protein. (273 aa)    
Predicted Functional Partners:
RN08_4047
Serine protease.
       0.872
RN08_4049
Membrane-anchored thioredoxin-like protein.
       0.753
RN08_4050
Endonuclease III.
     
 0.737
RN08_0242
Transcriptional regulator NadR.
    
 0.647
RN08_4052
cAMP receptor protein.
  
  
 0.639
RN08_2704
Glutamine-dependent NAD(+) synthetase.
  
 
 0.633
RN08_2036
Glycine dehydrogenase.
    
  0.592
RN08_2372
Dihydroorotate dehydrogenase.
 
 
 0.487
RN08_3988
GTP cyclohydrolase I.
  
 
 0.470
RN08_2715
Folylpolyglutamate synthase FolC.
  
 
 0.459
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.