STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4065Hypothetical protein. (154 aa)    
Predicted Functional Partners:
RN08_4263
Glutamate synthase large subunit.
    
  0.946
RN08_3301
glutamate--tRNA ligase.
    
  0.920
RN08_3321
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
    
 0.816
RN08_1548
Carbamoyl-phosphate synthase large subunit.
  
 
  0.808
RN08_1547
Carbamoyl-phosphate synthase small subunit.
    
  0.800
RN08_1778
Imidazole glycerol phosphate synthase subunit HisF.
    
  0.791
RN08_1775
Imidazole glycerol phosphate synthase subunit HisH.
    
  0.790
RN08_1882
CTP synthase.
    
  0.785
RN08_3747
GMP synthase.
  
 
  0.783
RN08_2441
Asparagine synthetase.
   
 
  0.777
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.