Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4069Methanol dehydrogenase transcriptional regulator MoxR. (358 aa)    
Predicted Functional Partners:
RN08_4068
Hypothetical protein.
 
     0.895
RN08_4071
Membrane protein.
 
  
 0.854
RN08_4067
Membrane protein.
 
    0.808
RN08_1628
Transcriptional activator protein.
   
    0.749
RN08_4066
Transmembrane protein.
 
     0.749
RN08_0752
Hypothetical protein.
   
    0.738
RN08_3642
Phosphate transport system transcriptional regulator PhoY.
   
  
 0.729
RN08_3599
DNA methylase.
   
    0.724
RN08_4238
Transcriptional regulator.
   
    0.722
RN08_0770
Mycofactocin biosynthesis transcriptional regulator MftR.
   
    0.721
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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