STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_40922-isopropylmalate synthase. (682 aa)    
Predicted Functional Partners:
RN08_3296
3-isopropylmalate dehydratase small subunit.
 
 
 0.999
RN08_3297
3-isopropylmalate dehydratase large subunit.
 
 
 0.999
RN08_3911
Acetaldehyde dehydrogenase.
  
 0.991
RN08_0215
Dihydroxy-acid dehydratase; Overlaps another CDS with the same product name.
  
 
 0.989
RN08_0216
Dihydroxy-acid dehydratase; Overlaps another CDS with the same product name.
  
 
 0.989
RN08_2453
Branched-chain amino acid aminotransferase.
 
 0.984
RN08_3315
Acetolactate synthase large subunit IlvB.
  
 
 0.977
RN08_2721
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.973
RN08_3314
Acetolactate synthase small subunit.
 
 
 0.966
RN08_2495
acetyl-/propionyl-CoA carboxylase subunit beta.
  
 0.962
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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