Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RN08_4095Cobyric acid synthase CobQ. (235 aa)    
Predicted Functional Partners:
RN08_4094
Ligase.
 0.999
RN08_2394
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase.
  
 0.918
RN08_2388
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase.
    
 0.905
RN08_4093
DNA polymerase III subunit epsilon.
       0.677
RN08_3140
cob(I)alamin adenosyltransferase.
     
 0.568
RN08_2390
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Overlaps another CDS with the same product name.
 
  
 0.552
RN08_3763
Oxidoreductase.
 
 
  0.552
RN08_2393
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase.
    
 0.540
RN08_2289
precorrin-8X methylmutase.
     
 0.533
RN08_1555
Guanylate kinase.
     
  0.526
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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