STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4115DNA ligase C. (358 aa)    
Predicted Functional Partners:
RN08_4114
Hypothetical protein.
   
 0.996
RN08_0301
Hypothetical protein.
   
 0.981
RN08_1045
Non-homologous end joining protein Ku.
 
  
 0.949
RN08_1802
DNA polymerase I.
  
 0.908
RN08_0002
DNA polymerase III subunit beta.
   
 0.902
RN08_2346
Lipoprotein LppK.
   
 0.902
RN08_2318
5'-3' exonuclease.
 
 0.867
RN08_0132
D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase.
  
 0.844
RN08_0704
Exonuclease V subunit gamma RecC.
  
   
 0.830
RN08_0478
Exodeoxyribonuclease III protein XthA.
  
 
 0.815
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.