STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4136Hypothetical protein. (71 aa)    
Predicted Functional Partners:
RN08_2943
Prophage protein.
   
  
 0.738
RN08_2301
Transmembrane protein.
     
 0.660
RN08_2944
Prophage integrase.
 
 
 0.563
RN08_0065
50S ribosomal protein L9.
   
  
 0.529
RN08_3578
Hypothetical protein.
  
    0.504
RN08_2864
Adenine phosphoribosyltransferase.
  
    0.501
RN08_3028
Arginine-rich protein.
  
     0.485
RN08_4139
Prephenate dehydrogenase TyrA.
  
    0.484
RN08_3563
Hypothetical protein.
   
  
 0.483
RN08_1590
Transcriptional regulator WhiA.
   
    0.463
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.