Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4136Hypothetical protein. (71 aa)    
Predicted Functional Partners:
RN08_2943
Prophage protein.
   
  
 0.718
RN08_2301
Transmembrane protein.
     
 0.661
RN08_0065
50S ribosomal protein L9.
    
 
 0.592
RN08_3578
Hypothetical protein.
  
    0.550
RN08_2864
Adenine phosphoribosyltransferase.
  
  
 0.547
RN08_4139
Prephenate dehydrogenase TyrA.
  
    0.503
RN08_3028
Arginine-rich protein.
  
     0.485
RN08_1590
Transcriptional regulator WhiA.
   
    0.484
RN08_3563
Hypothetical protein.
   
    0.484
RN08_0781
50S ribosomal protein L3.
    
 0.473
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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