STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4137Cytidine/deoxycytidylate deaminase. (152 aa)    
Predicted Functional Partners:
RN08_4138
Hypothetical protein.
       0.858
RN08_2540
Haloalkane dehalogenase.
      0.833
RN08_3651
Uracil phosphoribosyltransferase.
   
 0.775
RN08_4139
Prephenate dehydrogenase TyrA.
       0.760
RN08_0478
Exodeoxyribonuclease III protein XthA.
 
 
 0.749
RN08_3743
Nucleoside hydrolase.
   
 0.699
RN08_3049
Thymidylate synthase ThyA.
  
 
 0.697
RN08_1582
Bifunctional riboflavin biosynthesis GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
 0.674
RN08_2156
Riboflavin biosynthesis protein RibA.
    
 0.674
RN08_1543
Bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase.
    
  0.672
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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