STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4138Hypothetical protein. (173 aa)    
Predicted Functional Partners:
RN08_4137
Cytidine/deoxycytidylate deaminase.
       0.858
RN08_4139
Prephenate dehydrogenase TyrA.
       0.769
RN08_3325
Hypothetical protein.
  
     0.758
RN08_3653
Hypothetical protein.
  
     0.736
RN08_2714
Integral membrane protein.
  
     0.711
RN08_3800
Hypothetical protein.
  
     0.702
RN08_3326
Hypothetical protein.
  
     0.698
RN08_1491
Transcriptional regulator.
  
     0.689
RN08_0403
Hypothetical protein.
  
     0.685
RN08_3546
Alanine/valine-rich protein.
  
     0.678
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.