Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4147acyl-CoA dehydrogenase FadE36. (351 aa)    
Predicted Functional Partners:
RN08_0176
acyl-CoA dehydrogenase FadE2.
   0.980
RN08_0151
acyl-CoA dehydrogenase FadE1.
   0.976
RN08_0150
3-hydroxyl-thioester dehydratase.
 
 0.773
RN08_3051
Short-chain type dehydrogenase/reductase.
 
 0.664
RN08_0956
Fatty oxidation protein FadB.
  
 0.638
RN08_2269
Polyketide synthase.
  
 0.630
RN08_0705
enoyl-CoA hydratase EchA3.
  
 0.591
RN08_4148
Hydrolase.
       0.579
RN08_1865
Bifunctional long-chain acyl-CoA synthase/lipase.
  
  0.534
RN08_1187
fatty-acid--CoA ligase FadD14.
 
  0.533
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.