Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4185Arabinosyltransferase A. (637 aa)    
Predicted Functional Partners:
RN08_4186
Arabinosyltransferase B.
 
 
0.999
RN08_4184
Arabinosyltransferase A.
     0.989
RN08_4181
Arabinofuranosyltransferase.
 
 
 0.977
RN08_4182
Arabinosyltransferase C.
    0.963
RN08_4199
Terminal beta-(1->2)-arabinofuranosyltransferase.
  
 
 0.944
RN08_2957
Alpha-(1->3)-arabinofuranosyltransferase.
  
  
 0.910
RN08_4180
decaprenylphosphoryl-D-2-keto erythropentose reductase.
 
  
 0.881
RN08_4178
GtrA family protein.
 
  
 0.811
RN08_4196
Membrane protein.
 
   0.810
RN08_4193
Polyketide synthase; Overlaps another CDS with the same product name.
  
 
 0.779
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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