STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4233Hypothetical protein. (473 aa)    
Predicted Functional Partners:
RN08_4234
Hypothetical protein.
       0.874
RN08_2403
Proline-rich membrane protein.
 
   
 0.841
RN08_4232
serine--tRNA ligase.
       0.781
RN08_4306
Hypothetical protein.
  
     0.774
RN08_3134
Transmembrane alanine-rich protein.
  
     0.771
RN08_2994
Transmembrane protein.
 
     0.767
RN08_1145
Membrane protein.
 
     0.765
RN08_1237
Hypothetical protein.
  
     0.759
RN08_3852
Mce family protein Mce4.
 
     0.745
RN08_0383
Transcriptional regulator.
  
    0.733
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.