STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4239Bacterioferritin BfrB. (181 aa)    
Predicted Functional Partners:
RN08_2081
Bacterioferritin BfrA.
     
 0.978
RN08_0942
Oxidase.
   
 
 0.917
RN08_1664
Ferrochelatase.
    
 0.914
RN08_2694
Alkyl hydroperoxide reductase subunit C.
  
  
 0.640
RN08_2996
Iron-dependent repressor and activator IdeR.
     
 0.585
RN08_0469
Lipoprotein aminopeptidase LpqL.
    
 0.580
RN08_1971
Hypothetical protein.
    
 0.580
RN08_3720
Trehalose 6-phosphate phosphatase.
   
 
 0.543
RN08_4238
Transcriptional regulator.
       0.542
RN08_3204
30S ribosomal protein S16.
  
    0.495
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.