Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4281ESX-2 secretion system protein EccD2. (129 aa)    
Predicted Functional Partners:
RN08_4282
ESX-2 secretion system protein EccD; Overlaps another CDS with the same product name.
      0.912
RN08_4283
ESX-2 secretion system protein EccD; Overlaps another CDS with the same product name.
      0.909
RN08_4284
Membrane protein.
  
  
 0.860
RN08_4280
Membrane-anchored mycosin.
  
  
 0.806
RN08_4279
ESX-2 secretion system protein EccE.
       0.791
RN08_4278
ESX-2 secretion system protein EccA.
     
 0.606
RN08_0334
ESX-3 secretion system protein EccE.
  
 
 0.579
RN08_4285
ESX-2 secretion-associated protein EspG2.
     
 0.574
RN08_4290
ESX-2 type VII secretion system protein EccC.
  
 
 0.493
RN08_1984
ESX-5 type VII secretion system protein EccC5.
  
 
 0.444
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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