STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4286ESAT-6 like protein EsxC. (37 aa)    
Predicted Functional Partners:
RN08_4287
ESAT-6 like protein EsxD.
     
 0.743
RN08_4285
ESX-2 secretion-associated protein EspG2.
  
  
 0.695
RN08_4284
Membrane protein.
   
 
 0.603
RN08_4290
ESX-2 type VII secretion system protein EccC.
   
 
 0.537
RN08_0329
ESAT-6 like protein EsxG.
   
 
 0.473
RN08_4281
ESX-2 secretion system protein EccD2.
     
 0.465
RN08_4282
ESX-2 secretion system protein EccD; Overlaps another CDS with the same product name.
     
 0.465
RN08_4283
ESX-2 secretion system protein EccD; Overlaps another CDS with the same product name.
     
 0.465
RN08_3034
DNA translocase FtsK.
   
 
 0.437
RN08_4279
ESX-2 secretion system protein EccE.
       0.408
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.