Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4292Hypothetical protein. (288 aa)    
Predicted Functional Partners:
RN08_1924
Transmembrane protein.
  
     0.757
RN08_2915
Hypothetical protein.
  
     0.746
RN08_3766
anti-sigma-D factor RsdA.
  
     0.727
RN08_3808
Alanine/valine-rich protein.
  
     0.688
RN08_4291
ESX-2 secretion system protein EccB.
 
     0.685
RN08_4290
ESX-2 type VII secretion system protein EccC.
 
     0.678
RN08_4175
Hypothetical protein.
 
     0.673
RN08_0399
PPE family protein PPE8.
  
     0.662
RN08_2185
Hypothetical protein.
  
     0.659
RN08_3696
PPE family protein PPE56; Overlaps another CDS with the same product name.
  
     0.649
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.