Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4294Hypothetical protein. (238 aa)    
Predicted Functional Partners:
RN08_4296
Alanine-rich protein.
     
 0.671
RN08_4293
Hypothetical protein.
  
    0.488
RN08_4299
Hypothetical protein.
   
   0.482
RN08_0125
Cation-transporter ATPase I.
   
  
 0.412
RN08_0476
Metal cation transporting ATPase H.
   
  
 0.412
RN08_1010
Metal cation transporter ATPase E.
   
  
 0.412
RN08_2211
Cation transporter ATPase F.
   
  
 0.412
RN08_0332
ESX-3 secretion system protein EccD.
  
    0.410
RN08_3810
ESX-4 secretion system protein EccD4.
  
    0.410
RN08_4269
ESX-1 secretion system protein EccD1; Overlaps another CDS with the same product name.
  
    0.410
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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