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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4300Alanine/proline-rich protein. (846 aa)    
Predicted Functional Partners:
RN08_4299
Hypothetical protein.
   
 
 0.998
RN08_4301
ESAT-6 like protein EsxE.
  
  
 0.962
RN08_4302
ESAT-6 like protein EsxF.
  
  
 0.957
RN08_4303
Hypothetical protein.
  
 
 0.895
RN08_3810
ESX-4 secretion system protein EccD4.
 
  
 0.892
RN08_3808
Alanine/valine-rich protein.
 
 
 0.789
RN08_3692
PPE family protein PPE54.
 
 
   0.781
RN08_0348
PPE family protein PPE6.
 
 
   0.780
RN08_3696
PPE family protein PPE56; Overlaps another CDS with the same product name.
 
 
   0.779
RN08_0346
PPE family protein PPE5.
 
 
   0.777
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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