STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4303Hypothetical protein. (169 aa)    
Predicted Functional Partners:
RN08_4302
ESAT-6 like protein EsxF.
  
 
 0.926
RN08_4299
Hypothetical protein.
     
 0.916
RN08_4300
Alanine/proline-rich protein.
  
 
 0.895
RN08_4301
ESAT-6 like protein EsxE.
  
 
 0.892
RN08_4304
poly(A) polymerase PcnA.
       0.841
RN08_0845
Hypothetical protein.
 
 
 0.756
RN08_0429
Hypothetical protein.
  
     0.731
RN08_4306
Hypothetical protein.
 
 
 
 0.723
RN08_0574
Transmembrane protein; Overlaps another CDS with the same product name.
  
     0.711
RN08_1263
Hypothetical protein.
  
     0.707
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.