STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4308Peptidoglycan biosynthesis protein. (307 aa)    
Predicted Functional Partners:
RN08_4307
Peptidoglycan biosynthesis protein.
     0.982
RN08_4310
Peptidoglycan biosynthesis protein; Overlaps another CDS with the same product name.
     0.975
RN08_0025
FHA domain-containing protein FhaA.
 
 
 
 0.918
RN08_4309
Peptidoglycan biosynthesis protein; Overlaps another CDS with the same product name.
      0.868
RN08_4306
Hypothetical protein.
 
   
 0.847
RN08_4305
Mutator protein MutT.
       0.798
RN08_4311
ECF RNA polymerase sigma factor SigM.
     
 0.621
RN08_1584
Membrane protein.
 
    0.561
RN08_2675
Hypothetical protein.
 
  
 0.543
RN08_4315
Peptidoglycan hydrolase.
 
   
 0.512
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.