STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUI70940.1Eukaryotic DNA topoisomerase I%2C catalytic core. (352 aa)    
Predicted Functional Partners:
recQ
ATP-dependent DNA helicase recQ.
    
 
 0.962
gyrB
DNA gyrase subunit B.
   
 
 0.958
parE
DNA topoisomerase 4 subunit B.
   
 
 0.958
rnhB
Ribonuclease HII.
    
 
 0.940
CUI26108.1
DNA topoisomerase III.
    
   0.929
CUI72913.1
Putative DNA ligase-like protein Rv0938/MT0965.
 
 
 
 0.844
CUI72889.1
valyl-tRNA synthetase.
 
    0.729
CUI93374.1
Putative DNA ligase-like protein Rv0938/MT0965.
 
 
 
 0.675
fdm
Formaldehyde dismutase.
  
     0.659
CUJ50065.1
Domain of uncharacterised function (DUF2383).
 
    0.636
Your Current Organism:
Achromobacter sp. ATCC31444
NCBI taxonomy Id: 1806484
Other names: A. sp. ATCC31444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.