STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saspl_049186WD_REPEATS_REGION domain-containing protein. (261 aa)    
Predicted Functional Partners:
SKI3
Superkiller protein 3.
    
 0.786
SKI3-2
Superkiller protein 3.
    
 0.786
SKI3-3
Superkiller protein 3.
    
 0.786
MTR4-6
ATP-dependent RNA helicase DOB1.
    
 0.755
helY
ATP-dependent RNA helicase HelY.
    
 0.755
MTR4-9
ATP-dependent RNA helicase DOB1.
    
 0.755
CDC73
Parafibromin.
    
 0.749
CDC73-2
Parafibromin.
    
 0.749
CTR9
RNA polymerase-associated protein CTR9.
    
 0.738
CTR9-2
RNA polymerase-associated protein CTR9.
    
 0.738
Your Current Organism:
Salvia splendens
NCBI taxonomy Id: 180675
Other names: S. splendens, Salvia splendens Ker Gawl., bonfire salvia, scarlet sage
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.