STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUPT4H1-3Transcription elongation factor SPT4. (267 aa)    
Predicted Functional Partners:
RPB9
DNA-directed RNA polymerase II subunit RPB9.
   
 0.988
RPB9-2
DNA-directed RNA polymerase II subunit RPB9.
   
 0.988
RPB4
DNA-directed RNA polymerase II subunit RPB4.
   
 0.987
RPB4-2
DNA-directed RNA polymerase II subunit RPB4.
   
 0.987
RPB11
DNA-directed RNA polymerase II subunit RPB11.
   
 0.986
RPB11-2
DNA-directed RNA polymerase II subunit RPB11.
   
 0.986
RPB11-3
DNA-directed RNA polymerase II subunit RPB11.
   
 0.986
RPB10
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.985
RPB10-2
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.985
RPB3-2
DNA-directed RNA polymerase II subunit RPB3.
   
 0.982
Your Current Organism:
Salvia splendens
NCBI taxonomy Id: 180675
Other names: S. splendens, Salvia splendens Ker Gawl., bonfire salvia, scarlet sage
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.