Saspl_039522 protein (Salvia splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Saspl_039522

AP2/ERF domain-containing protein. (577 aa)

Predicted Functional Partners:

galT

0.943

Saspl_018873

0.943

galT-2

0.943

Saspl_051973

0.875

Saspl_052169

0.841

Saspl_052489

0.841

Saspl_050669

0.841

Saspl_050928

0.841

GALK2

0.841

Saspl_042589

0.841

Your Current Organism:

Salvia splendens

NCBI taxonomy Id: 180675
Other names: S. splendens, Salvia splendens Ker Gawl., bonfire salvia, scarlet sage

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GALK2	Saspl_018873	A0A4D8YM03	A0A4D9AW90	N-acetylgalactosamine kinase.	Uncharacterized protein.	0.977
GALK2	Saspl_039522	A0A4D8YM03	A0A4D8ZVL7	N-acetylgalactosamine kinase.	AP2/ERF domain-containing protein.	0.841
GALK2	galT	A0A4D8YM03	A0A4D9ADN6	N-acetylgalactosamine kinase.	UDPglucose--hexose-1-phosphate uridylyltransferase.	0.977
GALK2	galT-2	A0A4D8YM03	A0A4D9BTH7	N-acetylgalactosamine kinase.	UDPglucose--hexose-1-phosphate uridylyltransferase.	0.977
Saspl_018873	GALK2	A0A4D9AW90	A0A4D8YM03	Uncharacterized protein.	N-acetylgalactosamine kinase.	0.977
Saspl_018873	Saspl_039522	A0A4D9AW90	A0A4D8ZVL7	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.943
Saspl_018873	Saspl_042589	A0A4D9AW90	A0A4D8YNQ3	Uncharacterized protein.	Uncharacterized protein.	0.977
Saspl_018873	Saspl_050669	A0A4D9AW90	A0A4D8YGL9	Uncharacterized protein.	Uncharacterized protein.	0.977
Saspl_018873	Saspl_050928	A0A4D9AW90	A0A4D8YLI3	Uncharacterized protein.	Uncharacterized protein.	0.977
Saspl_018873	Saspl_051973	A0A4D9AW90	A0A4D8Y6U0	Uncharacterized protein.	Sucrose synthase; Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. Belongs to the glycosyltransferase 1 family. Plant sucrose synthase subfamily.	0.610
Saspl_018873	Saspl_052169	A0A4D9AW90	A0A4D8Y0L5	Uncharacterized protein.	Remorin_C domain-containing protein.	0.977
Saspl_018873	Saspl_052489	A0A4D9AW90	A0A4D8Y692	Uncharacterized protein.	Uncharacterized protein.	0.977
Saspl_039522	GALK2	A0A4D8ZVL7	A0A4D8YM03	AP2/ERF domain-containing protein.	N-acetylgalactosamine kinase.	0.841
Saspl_039522	Saspl_018873	A0A4D8ZVL7	A0A4D9AW90	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.943
Saspl_039522	Saspl_042589	A0A4D8ZVL7	A0A4D8YNQ3	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.841
Saspl_039522	Saspl_050669	A0A4D8ZVL7	A0A4D8YGL9	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.841
Saspl_039522	Saspl_050928	A0A4D8ZVL7	A0A4D8YLI3	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.841
Saspl_039522	Saspl_051973	A0A4D8ZVL7	A0A4D8Y6U0	AP2/ERF domain-containing protein.	Sucrose synthase; Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. Belongs to the glycosyltransferase 1 family. Plant sucrose synthase subfamily.	0.875
Saspl_039522	Saspl_052169	A0A4D8ZVL7	A0A4D8Y0L5	AP2/ERF domain-containing protein.	Remorin_C domain-containing protein.	0.841
Saspl_039522	Saspl_052489	A0A4D8ZVL7	A0A4D8Y692	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.841