STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saspl_027821RING-type domain-containing protein. (118 aa)    
Predicted Functional Partners:
Saspl_050732
F-box domain-containing protein.
    
  0.451
RP-L40e-3
Large subunit ribosomal protein L40e.
    
  0.451
RP-L40e-4
Large subunit ribosomal protein L40e.
    
  0.451
Saspl_038239
F-box domain-containing protein.
    
  0.451
Saspl_027456
F-box domain-containing protein.
    
  0.451
RP-L40e-6
Large subunit ribosomal protein L40e.
    
  0.451
RP-L40e-9
Large subunit ribosomal protein L40e.
    
  0.451
Saspl_002840
Uncharacterized protein.
    
  0.451
RP-S27Ae
Small subunit ribosomal protein S27Ae.
    
  0.446
RP-L40e-5
Large subunit ribosomal protein L40e.
    
  0.446
Your Current Organism:
Salvia splendens
NCBI taxonomy Id: 180675
Other names: S. splendens, Salvia splendens Ker Gawl., bonfire salvia, scarlet sage
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.