STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RGL4-14Rhamnogalacturonan endolyase. (394 aa)    
Predicted Functional Partners:
Saspl_049553
Uncharacterized protein.
  
     0.522
Saspl_023978
Uncharacterized protein.
  
     0.464
Saspl_044740
Uncharacterized protein.
  
     0.442
Saspl_000104
Uncharacterized protein.
  
     0.435
Saspl_025798
Uncharacterized protein.
  
     0.433
Saspl_037108
Uncharacterized protein.
  
     0.429
Saspl_038479
Uncharacterized protein.
  
     0.427
Saspl_002589
Uncharacterized protein.
  
     0.424
Saspl_014653
WHy domain-containing protein.
  
     0.419
Saspl_008676
Tyrosine-protein phosphatase domain-containing protein.
  
     0.418
Your Current Organism:
Salvia splendens
NCBI taxonomy Id: 180675
Other names: S. splendens, Salvia splendens Ker Gawl., bonfire salvia, scarlet sage
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.