STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUF6-2Pumilio-like proteiny domain family member 6. (666 aa)    
Predicted Functional Partners:
RPF2
Ribosome production factor 2.
   
 
 0.994
RPF2-2
Ribosome production factor 2.
   
 
 0.994
RPF2-3
Ribosome production factor 2.
   
 
 0.994
DDX24
ATP-dependent RNA helicase DDX24/MAK5.
   
 
 0.990
DDX24-2
ATP-dependent RNA helicase DDX24/MAK5; Belongs to the DEAD box helicase family.
   
 
 0.990
BRX1
Ribosome biogenesis protein BRX1.
   
 
 0.989
BRX1-2
Ribosome biogenesis protein BRX1.
   
 
 0.989
BRX1-3
Ribosome biogenesis protein BRX1.
   
 
 0.989
BRX1-4
Ribosome biogenesis protein BRX1.
   
 
 0.989
BRX1-5
Ribosome biogenesis protein BRX1.
   
 
 0.989
Your Current Organism:
Salvia splendens
NCBI taxonomy Id: 180675
Other names: S. splendens, Salvia splendens Ker Gawl., bonfire salvia, scarlet sage
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.